Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007083.1_2818_3575_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2818 - 3575

Intron Length:

758

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

TGCCCCGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

CACCCTCTGACT

Flanking Amino Acid:

IALVNCCPPFRAFAERLAQF

Intron Amino Acid Position:

352

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

71.8

33.2

Major BPS

69.1

0.47

60.7

37.6

Major PPT

62.2

0.27

1.1

57.1

38.6

Minor 5ss

24.1

-3

3.2

29.7

43.3

Minor BPS

48.3

-0

1.7

62.01

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023887

Chromosome:

PEDO01007083.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019943

21 - 4059

4039