Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007088.1_4097_4404_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4097 - 4404

Intron Length:

308

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTGAC

U12 Branch Point Sequence:

TGTTGGTGACGT

Flanking Amino Acid:

RTIEDAIAVLSVANELDRHP

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

73.2

37.5

Major BPS

56.2

0.15

1.3

48.8

46.3

Major PPT

78.1

0.63

0.7

25.2

Minor 5ss

31.6

-2.1

3.4

43.4

44.3

Minor BPS

37.3

-0.8

2.6

60.99

48.3

Associated Gene:

Gene:

CCDC124

Ensembl Gene ID:

ENSAPLG00000018897

Chromosome:

PEDO01007088.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031416

3336 - 5609

2274