Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007109.1_1125_1303_R

Intron Information:

Intron Rank:

137847

Intron Class:

major

Intron Phase:

Intron Coordinates:

1125 - 1303

Intron Length:

179

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CCTTGCCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

GAGCTCTCAGGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

71.6

Major BPS

58.6

0.22

1.5

38.9

Major PPT

76.7

0.6

0.8

69.5

31.2

Minor 5ss

30.3

-2.2

3.1

42.2

44.5

Minor BPS

39.7

-0.8

1.8

41.81

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021660

Chromosome:

PEDO01007109.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030193

504 - 1598

1095