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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007149.1_872_1202_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
872 - 1202
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TCTCCTTTTACA
Flanking Amino Acid:
LVVILVVALVVVQLQSRSSH
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
88.3
0.86
0.7
83
25.5
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
63.8
0.43
1.6
72.64
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017600
Chromosome:
PEDO01007149.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030549
519 - 2148
1630