About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007153.1_3623_4562_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
3623 - 4562
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
89.5
0.89
0.6
88.5
20.9
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
75.4
0.87
1.5
92.5
29.4

Associated Gene:

Gene:
RCSD1
Ensembl Gene ID:
ENSAPLG00000025477
Chromosome:
PEDO01007153.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031601
1602 - 6503
4902