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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007165.1_7782_7867_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7782 - 7867
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CTCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TGTCCTCTCACC
Flanking Amino Acid:
GALTDIVTHTRMNEEQIAAV
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.6
0.49
0.7
65.2
23.5
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
48.4
-0.1
2
65.35
40

Associated Gene:

Gene:
PAK4
Ensembl Gene ID:
ENSAPLG00000023595
Chromosome:
PEDO01007165.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034125
2509 - 9659
7151