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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007174.1_1925_2199_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1925 - 2199
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CCGGGCTGACGC
Flanking Amino Acid:
PWELSWSRAEAFCRRFGSST
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
74.6
0.55
0.8
68.4
31.8
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
33.7
-1.2
2.1
33.56
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018026
Chromosome:
PEDO01007174.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031217
718 - 4542
3825
ENSAPLT00000031041
21 - 5219
5199
ENSAPLT00000018081
1016 - 4542
3527