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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007174.1_6774_7309_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6774 - 7309
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TCTCCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAG
U12 Branch Point Sequence:
GCCCCCCCAGCG
Flanking Amino Acid:
DNVWIGLHHWVSCRGRTTPA
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
39.5
-0.6
1.5
43.7
39.4
Major PPT
81.3
0.7
0.7
76.3
25.6
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
39
-0.9
2
38.84
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017366
Chromosome:
PEDO01007174.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037296
5420 - 8864
3445