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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007181.1_1836_1937_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1836 - 1937
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
CCTTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
CCTGCCTTGTCC
Flanking Amino Acid:
QRDAELLEDIRSYSKQRAAI
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
75
0.56
0.8
69
31.6
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
42.9
-0.5
3.5
60.91
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018642
Chromosome:
PEDO01007181.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043319
1631 - 1986
356