About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007194.1_1711_1796_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1711 - 1796
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCCTTTTCACCC
Flanking Amino Acid:
VETLVVSRKQRSLYVGAASG
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.5
0.64
0.8
70.6
34.8
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
44.8
-0.4
1.8
48.67
42.4

Associated Gene:

Gene:
SEMA4G
Ensembl Gene ID:
ENSAPLG00000004215
Chromosome:
PEDO01007194.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039106
181 - 3320
3140
ENSAPLT00000032106
60 - 3069
3010
ENSAPLT00000004316
21 - 3069
3049