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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007206.1_1628_2062_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1628 - 2062
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTATTT
Flanking Amino Acid:
QYLPMTQEELGKLATAEGFG
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.7
0.8
0.8
78.1
36.2
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
62
0.46
1.6
74.68
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027243
Chromosome:
PEDO01007206.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046360
21 - 4878
4858