Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007218.1_1340_1440_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1340 - 1440

Intron Length:

101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCGGC

5'SS Class:

major

3'SS Sequence:

CGCGCTCCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAT

U12 Branch Point Sequence:

CTGCCCCCATCG

Flanking Amino Acid:

AAMSIVIGIGGVTNGGKTTL

Intron Amino Acid Position:

178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

57.5

42.3

Major BPS

48.9

-0

1.3

39.1

Major PPT

65.7

0.35

0.9

61.4

Minor 5ss

30.8

-2.2

3.3

32.5

42.6

Minor BPS

-0.8

2.1

45.87

46.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019985

Chromosome:

PEDO01007218.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039093

21 - 1856

1836