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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007218.1_1532_1769_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1532 - 1769
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
ATCGCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATCG
Flanking Amino Acid:
SVVHQDDFFKPQDEIEVEDG
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.3
0.52
1
69.2
41.2
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
67
0.4
1.7
71.72
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019985
Chromosome:
PEDO01007218.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039093
21 - 1856
1836