Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007223.1_116_249_R

Intron Information:

Intron Rank:

143064

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

116 - 249

Intron Length:

134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTACGGTGC

5'SS Class:

weak_major

3'SS Sequence:

CCCCTGTCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTCAT

U12 Branch Point Sequence:

ACCCCCTCAGTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.8

0.19

1.2

49.2

42.4

Major BPS

64.7

0.37

1.2

39.8

Major PPT

69.2

0.43

0.8

60.1

35.4

Minor 5ss

38.9

-1.2

3.6

58.9

45.9

Minor BPS

45.9

-0.3

1.7

50.36

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024324

Chromosome:

PEDO01007223.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025971

21 - 3222

3202

ENSAPLT00000048238

21 - 3222

3202

ENSAPLT00000044292

21 - 3222

3202

ENSAPLT00000030365

21 - 3222

3202