Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007223.1_2375_2506_R

Intron Information:

Intron Rank:

143084

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2375 - 2506

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-CG

5'SS Sequence:

CCG|GTGCCGTGC

5'SS Class:

weak_major

3'SS Sequence:

GGTGCCGGTGCCG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGGTGAT

U12 Branch Point Sequence:

GTGATGCCAACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.9

0.05

1.2

43.3

41.1

Major BPS

57.3

0.18

1.3

48.8

46.3

Major PPT

35.6

-0.8

3.1

42.5

43.2

Minor 5ss

36.6

-1.5

3.5

49.2

47.4

Minor BPS

36.6

-1.1

2.3

41.5

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024324

Chromosome:

PEDO01007223.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048238

21 - 3222

3202