Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007223.1_322_1281_R

Intron Information:

Intron Rank:

143080

Intron Class:

major

Intron Phase:

Intron Coordinates:

322 - 1281

Intron Length:

960

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

GTCCCCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCCCAC

U12 Branch Point Sequence:

CGTGTCCCACGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

47.8

-0.1

1.4

58.1

40.4

Major PPT

68.8

0.42

0.8

61.8

28.9

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

34.9

-1

2.1

48.49

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024324

Chromosome:

PEDO01007223.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045017

205 - 3222

3018