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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007226.1_1142_1721_F

Intron Information:

Intron Rank:
127241
Intron Class:
major
Intron Phase:
Intron Coordinates:
1142 - 1721
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TGCCCCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
GCCCCTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.5
40.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
67.1
0.39
1
66.4
33.4
Minor 5ss
33.8
-1.8
3
40.2
39.7
Minor BPS
51.8
-0
1.5
50.53
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018614
Chromosome:
PEDO01007226.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040240
21 - 2195
2175
ENSAPLT00000039890
21 - 2195
2175