Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007255.1_1303_1423_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1303 - 1423

Intron Length:

121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGCGCCG

5'SS Class:

weak_major

3'SS Sequence:

TCTCTCTCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTGAG

U12 Branch Point Sequence:

GGTGGCTGAGCT

Flanking Amino Acid:

VFFDVTIGGQEVGRMKIELF

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.2

44.9

44.6

Major BPS

43.9

-0.3

1.6

36.8

44.4

Major PPT

81.4

0.71

0.7

76.7

25.3

Minor 5ss

29.8

-2.3

3.4

38.8

46.5

Minor BPS

44.2

-0.3

2.1

62.56

46.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027942

Chromosome:

PEDO01007255.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017819

21 - 2818

2798

ENSAPLT00000034905

21 - 2818

2798