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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007271.1_8295_9483_F

Intron Information:

Intron Rank:
137777
Intron Class:
major
Intron Phase:
Intron Coordinates:
8295 - 9483
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGATACT
5'SS Class:
major
3'SS Sequence:
ATTTCGCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACAATTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
77.8
36.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
70.9
0.47
1
66.2
40.1
Minor 5ss
36.3
-1.5
3.1
51.8
44.8
Minor BPS
61
0.34
1.3
62.66
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024196
Chromosome:
PEDO01007271.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033601
7828 - 10374
2547