Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007280.1_710_771_F

Intron Information:

Intron Rank:

137705

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

710 - 771

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAACGTG

5'SS Class:

major

3'SS Sequence:

TCTTTGGCAAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCATCAT

U12 Branch Point Sequence:

AGGTCATCAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.8

0.35

1.3

60.4

44.7

Major BPS

75.6

0.64

1.1

76.2

37.5

Major PPT

49.4

-0

1.7

42.1

Minor 5ss

34.7

-1.7

3.4

46.9

48.5

Minor BPS

-0.2

1.9

52.34

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024157

Chromosome:

PEDO01007280.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030312

21 - 1214

1194