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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007291.1_528_746_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
528 - 746
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCGTCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTTTTTTTGAGC
Flanking Amino Acid:
LEEEGLDWDLIYIGRKRMQG
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
77
31.3
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
72.9
0.51
0.8
65.7
30.3
Minor 5ss
34
-1.8
2.7
42.8
36.9
Minor BPS
65
0.46
1.6
76.51
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023678
Chromosome:
PEDO01007291.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037970
21 - 1978
1958