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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007313.1_567_1435_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
567 - 1435
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTACTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
GGWGEKEQPRTVQRGRMPPT
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.5
0.75
0.8
78.6
34.3
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025793
Chromosome:
PEDO01007313.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021126
21 - 2598
2578