Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007326.1_1071_1542_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1071 - 1542

Intron Length:

472

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTAATCACG

5'SS Class:

weak_major

3'SS Sequence:

CCCTTCCTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCCT

U12 Branch Point Sequence:

CGTCCCTTCCTG

Flanking Amino Acid:

DPGVPAPPRPTFTAWCNSHL

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.5

0.06

1.4

50.4

Major BPS

29.7

-1.2

4.2

43.2

Major PPT

72.2

0.5

0.9

68.4

31.9

Minor 5ss

41.6

-0.9

2.8

54.9

42.2

Minor BPS

-1.1

3.5

48.98

45.1

Associated Gene:

Gene:

ACTN4

Ensembl Gene ID:

ENSAPLG00000026055

Chromosome:

PEDO01007326.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047122

21 - 10002

9982

ENSAPLT00000043947

21 - 10002

9982