Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007326.1_3432_3725_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3432 - 3725

Intron Length:

294

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGCGGC

5'SS Class:

major

3'SS Sequence:

GGTTCGCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTAAC

U12 Branch Point Sequence:

CCAGCCTTAACC

Flanking Amino Acid:

LDIPKMLDAEDIVNTARPDE

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

Major BPS

64.7

0.37

1.1

67.2

35.2

Major PPT

73.8

0.53

65.7

40.9

Minor 5ss

36.2

-1.6

3.3

41.6

45.3

Minor BPS

67.2

0.52

1.5

66.7

44.9

Associated Gene:

Gene:

ACTN4

Ensembl Gene ID:

ENSAPLG00000026055

Chromosome:

PEDO01007326.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043947

21 - 10002

9982