Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007328.1_415_498_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

415 - 498

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGC|GTGAGTGAC

5'SS Class:

major

3'SS Sequence:

CCCCCGACCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATAAAA

U12 Branch Point Sequence:

GACCCTATAAAA

Flanking Amino Acid:

ILTFPDVGHTHESCFAPLFA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.1

0.36

1.3

62.8

38.2

Major BPS

65.3

0.38

71.6

30.1

Major PPT

60.3

0.23

0.9

49.8

32.7

Minor 5ss

28.5

-2.5

3.1

29.9

36.2

Minor BPS

46.9

-0.2

1.7

53.36

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029348

Chromosome:

PEDO01007328.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026979

21 - 1077

1057