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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007341.1_787_925_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
787 - 925
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCGA
5'SS Class:
major
3'SS Sequence:
TCCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GGGTGCTGATGG
Flanking Amino Acid:
PSIVGRPRHQGVMVGMGQKD
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.5
45.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
71.5
0.48
0.7
65.1
23.5
Minor 5ss
28.7
-2.4
3.4
38.4
46.6
Minor BPS
37.3
-1.1
2.2
37.5
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020856
Chromosome:
PEDO01007341.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040298
513 - 1857
1345