Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007348.1_1329_1776_F

Intron Information:

Intron Rank:

135755

Intron Class:

major

Intron Phase:

Intron Coordinates:

1329 - 1776

Intron Length:

448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTGAGTACG

5'SS Class:

major

3'SS Sequence:

TGTATTTCTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TCCTGTTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.7

0.39

1.3

64.1

41.7

Major BPS

0.52

1.1

77.7

35.3

Major PPT

78.6

0.64

0.8

73.3

37.2

Minor 5ss

32.1

-2

2.6

35.5

34.4

Minor BPS

63.1

0.41

1.8

70.26

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023092

Chromosome:

PEDO01007348.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041196

21 - 2280

2260