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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007348.1_97_1776_F

Intron Information:

Intron Rank:
135754
Intron Class:
major
Intron Phase:
Intron Coordinates:
97 - 1776
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCCTGTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
78.6
0.64
0.8
73.3
37.2
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
63.1
0.41
1.8
70.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023092
Chromosome:
PEDO01007348.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034539
21 - 2280
2260