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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007348.1_97_933_F

Intron Information:

Intron Rank:
135756
Intron Class:
major
Intron Phase:
Intron Coordinates:
97 - 933
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCACCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CCTTCCCCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
72.1
0.5
0.8
65.6
28.8
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
46
-0.3
2.1
59.96
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023092
Chromosome:
PEDO01007348.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041196
21 - 2280
2260