Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007365.1_544_613_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

544 - 613

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTGAGTATG

5'SS Class:

major

3'SS Sequence:

CCAACGCCCCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

CCCTGCTGAGCA

Flanking Amino Acid:

IKSAFDPPSFPICLLGNRTL

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.2

0.41

1.3

69.1

43.2

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

57.7

0.17

0.9

46.3

36.3

Minor 5ss

35.8

-1.6

2.9

41.7

Minor BPS

44.1

-0.4

2.1

51.45

46.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013809

Chromosome:

PEDO01007365.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014404

13 - 7886

7874