Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007365.1_5654_6000_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5654 - 6000

Intron Length:

347

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAGGCAGC

5'SS Class:

major

3'SS Sequence:

TTCTCTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTCAG

U12 Branch Point Sequence:

CCGGGCTCAGCC

Flanking Amino Acid:

SLDEVAPILSMFFLMCYMFV

Intron Amino Acid Position:

377

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.2

0.41

1.2

44.9

Major BPS

45.3

-0.3

1.7

51.1

46.3

Major PPT

86.1

0.81

0.7

81.1

Minor 5ss

40.8

-1

3.2

55.7

42.3

Minor BPS

38.8

-0.8

2.1

41.56

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013809

Chromosome:

PEDO01007365.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014404

13 - 7886

7874