Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007365.1_6638_6721_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6638 - 6721

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGTCG

5'SS Class:

strong_major

3'SS Sequence:

ACCTTCCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

ACTGCAGGACCT

Flanking Amino Acid:

EEGPPHTKNWRPQLLVLVRV

Intron Amino Acid Position:

485

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.1

38.1

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

78.8

0.65

0.8

69.5

36.2

Minor 5ss

31.6

-2.1

3.2

38.5

46.7

Minor BPS

37.2

-0.8

2.4

55.91

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013809

Chromosome:

PEDO01007365.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014404

13 - 7886

7874