About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007435.1_1787_1903_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1787 - 1903
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGAAACA
5'SS Class:
major
3'SS Sequence:
TCCTTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTCTCCTTATTT
Flanking Amino Acid:
GAENEYFEQKARKCPSCPSP
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1
63.7
36.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
84.7
0.78
0.8
76.7
36.4
Minor 5ss
26.3
-2.7
3
31.8
42.3
Minor BPS
74.7
0.85
1.5
87.57
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028538
Chromosome:
PEDO01007435.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023252
749 - 2143
1395