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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007440.1_2426_2532_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2426 - 2532
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACC
5'SS Class:
major
3'SS Sequence:
CCCCAAAACGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCAAAA
U12 Branch Point Sequence:
CTTCCCCCAAAA
Flanking Amino Acid:
NPYQADVDGVRFLGTSGQNI
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67
35.3
Major BPS
47.3
-0.1
1
50.8
30.3
Major PPT
50.6
0.01
0.9
43.7
29.2
Minor 5ss
26.7
-2.7
3.2
34.1
41.8
Minor BPS
47.6
-0.1
2
63.69
41.9

Associated Gene:

Gene:
POLD2
Ensembl Gene ID:
ENSAPLG00000021910
Chromosome:
PEDO01007440.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021009
858 - 4779
3922