Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007440.1_2886_2966_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2886 - 2966

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCTGGGG

5'SS Class:

major

3'SS Sequence:

CCCGCCGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

GGGGTCTCACCG

Flanking Amino Acid:

STQSRDSLHKARYLTRKTQA

Intron Amino Acid Position:

347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.7

0.3

1.1

47.8

42.6

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

60.6

0.24

0.9

52.9

31.1

Minor 5ss

22.2

-3.2

3.4

29.3

43.3

Minor BPS

41.7

-0.7

1.9

40.32

43.7

Associated Gene:

Gene:

POLD2

Ensembl Gene ID:

ENSAPLG00000021910

Chromosome:

PEDO01007440.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021009

858 - 4779

3922