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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007447.1_217_717_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
217 - 717
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTCTTTTGATT
Flanking Amino Acid:
PMDVIRARVQVEGKSSIILT
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88
0.85
0.8
85.4
34.1
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
63.4
0.5
1.2
75.19
36.2

Associated Gene:

Gene:
SLC25A44
Ensembl Gene ID:
ENSAPLG00000010060
Chromosome:
PEDO01007447.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010469
21 - 3136
3116