Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007460.1_655_2254_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

655 - 2254

Intron Length:

1600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAGGCACT

5'SS Class:

major

3'SS Sequence:

ATGTCAAAGTCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

TTCTTTCAGACT

Flanking Amino Acid:

SFLEQYSIHDSELSCWFSL*

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.3

0.31

1.1

61.8

42.8

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

55.4

0.12

1.1

53.3

44.7

Minor 5ss

42.5

-0.8

3.2

59.8

39.8

Minor BPS

47.3

-0.1

70.58

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018505

Chromosome:

PEDO01007460.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041024

106 - 2283

2178