About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007543.1_9269_9378_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9269 - 9378
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
CACGCTTCACCC
Flanking Amino Acid:
TAQFLNVGLKGECFSLAQHT
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
78.7
0.65
0.8
69.1
37
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
43.3
-0.5
1.8
46.71
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008655
Chromosome:
PEDO01007543.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009027
6834 - 11878
5045