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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007543.1_9583_10020_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9583 - 10020
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCTGGCAGA
5'SS Class:
major
3'SS Sequence:
TGCTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
TTGTGCTGCAGT
Flanking Amino Acid:
MVRRRGVGSVLDEMYPNMPM
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.1
0.24
1.3
52.9
43.7
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
82.4
0.73
0.8
76.5
32
Minor 5ss
23.5
-3
3.7
28.4
38.1
Minor BPS
43.7
-0.4
2.5
68.2
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008655
Chromosome:
PEDO01007543.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034728
8597 - 11878
3282