Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007544.1_677_854_F

Intron Information:

Intron Rank:

135851

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

677 - 854

Intron Length:

178

Sequence Information:

Terminal Dinucleotides:

GC-AC

5'SS Sequence:

CAC|GCCAGAAGT

5'SS Class:

weak_major

3'SS Sequence:

TTAAGCGTGGAAC|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTCTTAA

U12 Branch Point Sequence:

CCTGTCTTAAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.6

0.16

67.9

42.7

Major BPS

64.5

0.36

1.2

57.7

41.3

Major PPT

31.7

-1

3.1

41.2

Minor 5ss

21.7

-3.3

3.6

31.7

34.8

Minor BPS

53.9

0.1

1.8

60.68

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023156

Chromosome:

PEDO01007544.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031679

21 - 1130

1110