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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007556.1_338_1371_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
338 - 1371
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GC-TG
5'SS Sequence:
TTG|GCTTGGCCC
5'SS Class:
weak_major
3'SS Sequence:
TCCAGCCCCATTG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GATCCCATAAGT
Flanking Amino Acid:
SLQPHWLGPIGLAPLAWPHN
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.3
54.5
41.2
Major BPS
79
0.72
1
69
38.9
Major PPT
36.7
-0.7
3
46
31
Minor 5ss
24.3
-3
3.8
32.2
35.9
Minor BPS
53.4
0.18
2
73.03
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030546
Chromosome:
PEDO01007556.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034364
21 - 1561
1541