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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007562.1_1115_1309_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1115 - 1309
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CTCGGCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GCTGCTGTGACG
Flanking Amino Acid:
PSDRNLDAWRDLGCRTTHCN
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.1
43.4
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
71.4
0.48
0.9
65
36.3
Minor 5ss
26.2
-2.7
2.9
22.9
37.3
Minor BPS
45.2
-0.5
2.2
50.31
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022925
Chromosome:
PEDO01007562.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036196
21 - 1881
1861