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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007569.1_209_314_R

Intron Information:

Intron Rank:
151754
Intron Class:
major
Intron Phase:
Intron Coordinates:
209 - 314
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
TGGCCTGGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
59
0.22
1
66.7
30
Major PPT
85.1
0.79
0.8
76.9
37.4
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
44
-0.4
2
53.11
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029219
Chromosome:
PEDO01007569.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030729
21 - 1268
1248