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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007599.1_1083_1347_R

Intron Information:

Intron Rank:
130642
Intron Class:
major
Intron Phase:
Intron Coordinates:
1083 - 1347
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCAAA
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATTCAAGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
68
38.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
89.3
0.88
0.7
84.5
30.4
Minor 5ss
41.1
-1
2.5
48.9
47
Minor BPS
47.5
-0.1
2
68.62
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017545
Chromosome:
PEDO01007599.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026536
21 - 1670
1650