Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007625.1_3221_3338_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3221 - 3338

Intron Length:

118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGCCAC

5'SS Class:

major

3'SS Sequence:

TCTCCCTGCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

TCTCCCTGCACA

Flanking Amino Acid:

TSALISAFPQLSTVVPGSLP

Intron Amino Acid Position:

337

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.3

63.2

43.4

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

72.9

0.52

0.9

67.7

32.3

Minor 5ss

33.6

-1.9

41.9

44.9

Minor BPS

0.15

69.78

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003134

Chromosome:

PEDO01007625.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003183

21 - 3599

3579