Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007631.1_542_904_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

542 - 904

Intron Length:

363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

CCTTCCCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

AGCGGCCCAACT

Flanking Amino Acid:

LAKQYPEAFSNIHESPILED

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

57.2

42.1

Major BPS

0.45

0.9

67.6

25.3

Major PPT

83.8

0.76

0.7

80.7

24.6

Minor 5ss

28.8

-2.4

3.1

36.7

41.6

Minor BPS

40.6

-0.6

2.2

56.01

45.8

Associated Gene:

Gene:

KXD1

Ensembl Gene ID:

ENSAPLG00000018012

Chromosome:

PEDO01007631.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034584

21 - 2410

2390

ENSAPLT00000024686

21 - 2410

2390