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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007667.1_3119_3229_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3119 - 3229
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
GCCGTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
GGAGGCTGAGCC
Flanking Amino Acid:
VQAWELLQFIRHTAKAADVV
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
57.9
41.8
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
69.7
0.44
0.9
61.7
34.9
Minor 5ss
31.7
-2.1
3.3
41.6
45.3
Minor BPS
40.5
-0.7
2
45.93
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028515
Chromosome:
PEDO01007667.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044398
1603 - 5206
3604
ENSAPLT00000039927
1603 - 5206
3604
ENSAPLT00000029982
1603 - 5206
3604