About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007667.1_3313_3566_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3313 - 3566
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CCGTTTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTCAC
U12 Branch Point Sequence:
AGGGAGGTCACG
Flanking Amino Acid:
GIVFNVYVTHLHAEYCREKD
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.3
65.8
40.2
Major BPS
51
0.02
1.3
54.8
42.1
Major PPT
74.7
0.56
1
72
38
Minor 5ss
36.6
-1.5
2.8
43.8
36.7
Minor BPS
28.5
-1.8
2.6
30.62
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028515
Chromosome:
PEDO01007667.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044398
1603 - 5206
3604
ENSAPLT00000039927
1603 - 5206
3604
ENSAPLT00000029982
1603 - 5206
3604