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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007696.1_67_514_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67 - 514
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAAAATA
5'SS Class:
major
3'SS Sequence:
TTGCCCCAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTGCCCCAAATA
Flanking Amino Acid:
WNIDSADGVDGRTRCILCL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.1
0.24
1.3
65
41
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
60.2
0.23
0.9
56
34
Minor 5ss
31.4
-2.1
3
32.6
41.9
Minor BPS
49.2
-0
2
65.41
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021063
Chromosome:
PEDO01007696.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039262
42 - 840
799