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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007704.1_2045_2234_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2045 - 2234
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAA
U12 Branch Point Sequence:
CTTTCCCTAAGC
Flanking Amino Acid:
DSPEPLPPAEGDAALGVSLW
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
48.8
-0
1.3
46.6
38.3
Major PPT
74.2
0.54
0.7
65.3
30.5
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
60.9
0.32
2
75.12
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024051
Chromosome:
PEDO01007704.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035012
21 - 4639
4619